PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904894
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 288aa    MW: 31808.6 Da    PI: 5.3958
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904894genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.4e-15501311098
                HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++k++  ++p++f++++ gk   s t++le+++g  ++v++    + +++vl++GW+ F + ++++e+D+++F+++++s+f   v++f+
  462904894  50 NFKHN-TIVPNRFLKHFTGK--LSGTIKLESPNGCLYDVQV--MDRYDKMVLGQGWEAFIDVHHINENDSLLFRHIKESSF--EVSIFD 131
                55665.778*****888777..6779***************..55566789*************************99999..999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.20940133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-1840134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1941135IPR015300DNA-binding pseudobarrel domain
CDDcd100173.85E-1742131No hitNo description
SMARTSM010195.1E-843133IPR003340B3 DNA binding domain
PfamPF023621.2E-1249131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEWGALLGSR NASVPPSKWE KQAESLIDPD TSKILGVERK TRFSKRMTGN FKHNTIVPNR  60
FLKHFTGKLS GTIKLESPNG CLYDVQVMDR YDKMVLGQGW EAFIDVHHIN ENDSLLFRHI  120
KESSFEVSIF DPDDCEKMFS CAGIKDTQSV QERSVDSVDT SSSSLHDTTE SSGSEKSTGS  180
DKGRHGKTAS MAAISSSSDV SGTGNSSESE SFESDDLEIP TGTDYVISSR SCLSEAQKER  240
VIAFIHEIEP EVTVFVAILR KCHVQPPVPS VVCFTTLFCC VRATLTVY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986370.18e-89PREDICTED: B3 domain-containing protein Os03g0619600-like
SwissprotQ6AV216e-74Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLK4A8R09e-89K4A8R0_SETIT; Uncharacterized protein
STRINGSi035266m2e-88(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-11B3 family protein